Publications

2020

  • S. Lequime, P. Bastide, S. Dellicour, P. Lemey & G. Baele (2020) nosoi: a stochastic agent-based transmission chain simulation framework in R. Methods in Ecology and Evolution. in press. [Link] [also on bioRxiv 2020.03.03.973107]
  • O. Faye*, M. de Lourdes Monteiro*, B. Vrancken*, M. Prot*, S. Lequime, M. Diarra, O. Ndiaye, T. Valdez, S. Tavarez, J. Ramos, S. Leal, C. Pires, A. Moreira, M. F. Tavares, L. Fernandes, J. N. Narreto, M. do Céu Teixeira, M. da Luz de Lima Mendonça, C. Cardosa da Sila Laite Gomes, M. S. Castellon, L. Ma, F. Lemoine, F. Gambaro, D. Delaune, G. Fall, M. Diop, A. Sakuntabhai, C. Loucoubar, P. Lemey, E. C. Holmes, O. Faye, A. A. Sall & E. Simon-Lorière. (2020) Genomic epidemiology of 2015–2016 Zika virus outbreak in Cape Verde. Emerging Infectious Diseases 26(6):1084-1090. [Link]
  • A. Baidaliuk, S. Lequime, I. Moltini-Conclois, S. Dabo, L. B. Dickson, M. Prot, V. Duong, P. Dussart, S. Boyer, C. Shi, J. Matthijnssens, J. Guglielmini, A. Gloria-Soria, E. Simon-Lorière & L. Lambrechts (2020) Novel genome sequences of cell-fusing agent virus allow comparison of virus phylogeny with the genetic structure of Aedes aegypti populations. Virus Evol. 6(1): veaa018. [Link]

2019

  • M. Altinli, S. Lequime, M. Courcelle, S. François, F. Justy, A.-S. Gosselin-Grenet, M. Ogliastro, M. Weill & M. Sicard (2019) Evolution and phylogeography of Culex pipiens densovirus. Virus Evol. 5(2): vez053 [Link]
  • A. Baidaliuk, E. Miot, S. Lequime, I. Moltini-Conclois, F. Delaigue, S. Dabo, L. Dickson, F. Aubry, S. Merkling, V.-M. Cao-Lormeau & L. Lambrechts (2019) Cell-fusing agent virus reduces arbovirus dissemination in Aedes aegypti mosquitoes in vivo. J. Virol. 93:e00705-19. [Link]
  • L. de Borba, S. M. Villordo, F. L. Marsico, J. M. Carballeda, C. V. Filomatori, L. G. Gebhard, H. M. Pallarés, S. Lequime, L. Lambrechts, I. Sánchez Vargas, C. D. Blair & A. V. Gamarnik (2019) RNA Structure Duplication in the Dengue Virus 3′ UTR: Redundancy or Host Specificity? mBio 10(1) e02506-18. [Link]

2018

  • A. Fontaine, S. Lequime, I. Moltini-Conclois, D. Jiolle, I. Leparc-Goffart, R. C. Reiner Jr. & L. Lambrechts (2018) Epidemiological significance of dengue virus genetic variation in mosquito infection dynamics. PLoS Pathog. 14(7): e1007187. [Link] (Highlighted by Caroline Ash (03 Aug. 2018) Transit time inside a mosquito. Science 361(6401): 464. [Link])
  • J. Peccoud, S. Lequime, I. Conclois, I. Giraud, L. Lambrechts & C. Gilbert (2018) A survey of virus recombination uncovers canonical features of artificial chimeras generated during library preparation. G3 (Bethesda) 8(4): 1129-1138. [Link]

2017

  • S. Lequime*, V. Richard*, V.-M. Cao-Lormeau & L. Lambrechts (2017) Full-genome dengue virus sequencing in mosquito saliva shows lack of convergent positive selection during transmission by Aedes aegypti. Virus Evol. 3(2): vex031. [Link]
  • S. Lequime & L. Lambrechts (2017) Discovery of flavivirus-derived endogenous viral elements in Anopheles mosquito genomes supports the existence of Anopheles-associated insect-specific flaviviruses. Virus Evol. 3(1): vew035. [Link]

2016

  • L. Lambrechts & S. Lequime (2016) Evolutionary dynamics of dengue virus populations within the mosquito vector. Curr. Opin. Virol. 21: 47-53. [Link]
  • S. Lequime, A. Fontaine, M. Ar Gouilh, I. Conclois-Moltini & L. Lambrechts (2016) Genetic drift, purifying selection and vector genotype shape dengue virus intra-host genetic diversity in mosquitoes. PLoS Genet. 12(6): e1006111. [Link] (Recommended by F. Fabre and B. Moury (2017) Vectors as motors (of virus evolution). Peer Community in Evolutionary Biology, 100021. [Link])
  • S. Lequime, R. E. Paul & L. Lambrechts (2016) Determinants of arbovirus vertical transmission in mosquitoes. PLoS Pathog. 12(5): e1005548. [Link]
  • A. Fontaine, D. Jiolle, I. Moltini-Conclois, S. Lequime & L. Lambrechts (2016) Excretion of dengue virus RNA by Aedes aegypti allows non-destructive monitoring of viral dissemination in individual mosquitoes. Sci. Rep. 6: 24885. [Link]

* stands for equal contributions