nosoi
The aim of nosoi (pronounced no.si) is to provide a flexible agent-based stochastic transmission chain/epidemic simulator in R. It is named after the daimones of plague, sickness and disease that escaped Pandora’s jar in the Greek mythology. nosoi is able to take into account the influence of multiple variable on the transmission process (e.g. dual-host systems (such as arboviruses), within-host viral dynamics, transportation, population structure), alone or taken together, to create complex but relatively intuitive epidemiological simulations.
detectEVE
detectEVE is an open-source Snakemake tool designed for the fast and precise detection of non-retroviral endogenous viral elements (nrEVEs) in genomic assemblies, offering minimal installation requirements and high user flexibility.